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DistTrack#1122

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saqzhao wants to merge 14 commits intomainfrom
pfastaSimilarity
Open

DistTrack#1122
saqzhao wants to merge 14 commits intomainfrom
pfastaSimilarity

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@saqzhao
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@saqzhao saqzhao commented Feb 11, 2026

Description

DistTrack calculates the Euclidean distance between two pFastas at each position

Testing

Testing for both package and command line

Checklist before requesting a review

  • I performed a self-review of my code
  • If it this a core feature, I added thorough tests
  • The command go fmt or make clean was used on all files included

Comment thread fasta/pFasta/compare_test.go Outdated
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codecov-commenter commented Feb 18, 2026

Codecov Report

❌ Patch coverage is 41.58416% with 59 lines in your changes missing coverage. Please review.
✅ Project coverage is 66.12%. Comparing base (bc420c7) to head (a8e9707).
⚠️ Report is 12 commits behind head on main.

Files with missing lines Patch % Lines
cmd/pFaTools/distTrack.go 25.64% 29 Missing ⚠️
fasta/pFasta/compare.go 45.16% 8 Missing and 9 partials ⚠️
cmd/pFaTools/pFaTools.go 0.00% 9 Missing ⚠️
fasta/pFasta/extract.go 81.81% 2 Missing and 2 partials ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1122      +/-   ##
==========================================
- Coverage   66.13%   66.12%   -0.02%     
==========================================
  Files         442      444       +2     
  Lines      172394   172539     +145     
==========================================
+ Hits       114020   114086      +66     
- Misses      56775    56847      +72     
- Partials     1599     1606       +7     

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rimangan
rimangan previously approved these changes Feb 18, 2026
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3 participants