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ilsReconstructSeq pipeline#1119

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saqzhao wants to merge 13 commits intomainfrom
ilsValidationNew
Open

ilsReconstructSeq pipeline#1119
saqzhao wants to merge 13 commits intomainfrom
ilsValidationNew

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@saqzhao
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@saqzhao saqzhao commented Dec 4, 2025

Description

all functions needed to perform ReconstructSeq informed by ILS using posterior probabilities from TRAILS

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codecov-commenter commented Dec 4, 2025

Codecov Report

❌ Patch coverage is 74.14634% with 53 lines in your changes missing coverage. Please review.
✅ Project coverage is 66.18%. Comparing base (c8b55a4) to head (556c144).

Files with missing lines Patch % Lines
reconstruct/postProbToWig.go 64.86% 33 Missing and 6 partials ⚠️
fasta/multiFa.go 50.00% 2 Missing and 4 partials ⚠️
reconstruct/postProbIntergenicToFa.go 86.36% 4 Missing and 2 partials ⚠️
reconstruct/ilsWigToBed.go 94.73% 1 Missing and 1 partial ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1119      +/-   ##
==========================================
+ Coverage   66.16%   66.18%   +0.01%     
==========================================
  Files         439      442       +3     
  Lines      172141   172345     +204     
==========================================
+ Hits       113895   114060     +165     
- Misses      56662    56687      +25     
- Partials     1584     1598      +14     

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@saqzhao saqzhao changed the base branch from main to refPosToAlnPosTests December 9, 2025 13:31
Base automatically changed from refPosToAlnPosTests to main February 4, 2026 19:04
@craiglowe craiglowe requested review from RavenYL and rimangan February 9, 2026 15:13
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2 participants