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@treangenlab

Treangen Lab

Treangen Lab @ Rice University

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  1. emu emu Public

    Python 86 13

  2. methphaser methphaser Public

    MethPhaser: methylation-based haplotype phasing of human genomes

    Python 54 6

  3. Olivar Olivar Public

    Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens

    Python 38 3

  4. bronko bronko Public

    Ultra-rapid detection of viral variants directly from sequencing data

    Rust 38

  5. lemur lemur Public

    Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

    Python 25 1

  6. radmicrobes radmicrobes Public

    2025 RAD microbes boot camp

    HTML 16 3

Repositories

Showing 10 of 25 repositories
  • radmicrobes Public

    2025 RAD microbes boot camp

    treangenlab/radmicrobes’s past year of commit activity
    HTML 16 MIT 3 0 1 Updated Apr 9, 2026
  • bronko-test Public
    treangenlab/bronko-test’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 8, 2026
  • Strainify_paper Public

    Scripts to reproduce results in the Strainify manuscript

    treangenlab/Strainify_paper’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Apr 7, 2026
  • Seqwin Public

    Ultrafast identification of signature sequences in microbial genomes

    treangenlab/Seqwin’s past year of commit activity
    C++ 15 GPL-3.0 1 3 0 Updated Apr 6, 2026
  • Olivar Public

    Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens

    treangenlab/Olivar’s past year of commit activity
    Python 38 GPL-3.0 3 8 0 Updated Apr 6, 2026
  • somatem Public

    LLM accessible long-read metagenomics pipeline with best practices

    treangenlab/somatem’s past year of commit activity
    Nextflow 1 GPL-3.0 0 25 1 Updated Apr 6, 2026
  • emu Public
    treangenlab/emu’s past year of commit activity
    Python 86 MIT 13 10 2 Updated Apr 5, 2026
  • Strainify Public

    Abundance analysis tool for short-read metagenomics

    treangenlab/Strainify’s past year of commit activity
    Python 10 MIT 0 2 0 Updated Apr 3, 2026
  • somatem-docs Public

    documents of the pipeline: flowchart, tools list, etc. in structured human readable formats

    treangenlab/somatem-docs’s past year of commit activity
    Mermaid 0 GPL-3.0 0 0 0 Updated Apr 1, 2026
  • Kente Public
    treangenlab/Kente’s past year of commit activity
    Python 3 0 0 0 Updated Mar 13, 2026
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