A Go package for engineering organisms.

High-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.

An R package for pre-processing and error evaluation of COI-5P barcode data

This repository contains data and code from the manuscript, "Analysis of biodiversity data suggests that species are hidden in predictable places".

Pipeline for building topologically-constrained phylogenies from DNA barcode data

Parser of BLAST results

DNA barcoding analysis pipeline

Automated DNA barcoding pipeline: chromatogram → phylogeny → species ID. Zero coding required. Built for ENTM201L @ UC Riverside. Docker + GitHub Classroom ready.

Tools for managing OTU definitions for barcoding fungi

A sequence-by-sequence denoiser for COI DNA barcode and metabarcode data

Bayesian modeling of DNA-barcoded tumor mixtures to quantify genotype-specific treatment resistance

Repository containing a python script for barcode gap plotting, as well as an example input-file for the script.

Bioinformatic processes used to obtain invertebrate DNA barcodes from Illumina sequencing output

Files from DIMACS 2007 DNA barcoding challenge

A bioinformatics pipeline that enables DNA barcode classification using a novel strobemer based profile hidden markov model (sPHMM) method.

Iterative extrapolation of species haplotype accumulation curves for genetic diversity assessment.