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Sankaran Lab

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  1. SCAVENGE SCAVENGE Public

    SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

    R 92 36

  2. mecom_var mecom_var Public

    HTML 25 23

  3. mito-genotyping mito-genotyping Public

    Repo for scripts for Ludwig et al mtDNA genotyping

    R 16 9

  4. mitodrift mitodrift Public

    Reconstructing single-cell lineage history using mitochondrial mutation drift dynamics

    R 10

  5. redeemR redeemR Public

    Forked from chenweng1991/redeemR

    R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.

    Jupyter Notebook 7

  6. mpn-gwas mpn-gwas Public

    Analysis repository for MPN GWAS manuscript

    R 4 3

Repositories

Showing 10 of 19 repositories
  • mitodrift Public

    Reconstructing single-cell lineage history using mitochondrial mutation drift dynamics

    sankaranlab/mitodrift’s past year of commit activity
    R 10 0 0 0 Updated Mar 5, 2026
  • WGBS Public
    sankaranlab/WGBS’s past year of commit activity
    R 0 0 0 0 Updated Feb 1, 2026
  • chip_resilience Public
    sankaranlab/chip_resilience’s past year of commit activity
    0 0 0 0 Updated Oct 17, 2025
  • perturb_multiome Public

    Code to analyze Perturb-multiome experiments

    sankaranlab/perturb_multiome’s past year of commit activity
    Jupyter Notebook 4 BSD-2-Clause 0 2 0 Updated Feb 12, 2025
  • redeem_reproducibility Public Forked from chenweng1991/redeem_reproducibility

    Analysis reproducibility of Weng et al paper "Deciphering cell states and genealogies of human hematopoiesis"

    sankaranlab/redeem_reproducibility’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Jan 22, 2024
  • redeemR Public Forked from chenweng1991/redeemR

    R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.

    sankaranlab/redeemR’s past year of commit activity
    Jupyter Notebook 7 MIT 6 0 0 Updated Jan 22, 2024
  • redeemV Public Forked from chenweng1991/redeemV
    sankaranlab/redeemV’s past year of commit activity
    Jupyter Notebook 3 4 0 0 Updated Jan 22, 2024
  • SCAVENGE Public

    SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

    sankaranlab/SCAVENGE’s past year of commit activity
    R 92 GPL-3.0 36 6 (1 issue needs help) 1 Updated Sep 1, 2023
  • hematopoiesis_be_screens Public

    Repo for scripts for Martin-Rufino et al. hematopoiesis base editor screens

    sankaranlab/hematopoiesis_be_screens’s past year of commit activity
    1 0 0 0 Updated Aug 14, 2023
  • mecom_var Public
    sankaranlab/mecom_var’s past year of commit activity
    HTML 25 23 0 0 Updated Jan 23, 2023
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