Repositories list

• pathvisio.github.io

  Public
  PathVisio website and tutorials (under development)

  HTML

  •

  MIT License

  •44 forks•00 stars•1111 issues•22 pull requests•Updated Apr 1, 2026Apr 1, 2026

• libGPML

  Public
  Java library for reading / writing GPML files

  Java

  •

  Apache License 2.0

  •66 forks•44 stars•55 issues•22 pull requests•Updated Dec 28, 2025Dec 28, 2025

• TestingGithub

  Public
  11 fork•00 stars•00 issues•11 pull request•Updated Aug 6, 2025Aug 6, 2025

• pathvisio

  Public
  PathVisio - pathway editor, visualization and analysis software

  Java

  •

  Apache License 2.0

  •2222 forks•2828 stars•102102 issues•11 pull request•Updated Jan 22, 2025Jan 22, 2025

• plugin-repo

  Public
  Plugin repository for PathVisio

  HTML

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 22, 2025Jan 22, 2025

• pathvisio-book

  Public
  :book: PathVisio

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •33 forks•33 stars•00 issues•00 pull requests•Updated Jan 15, 2024Jan 15, 2024

• pathvisio4-ant

  Public
  Java

  •

  Apache License 2.0

  •44 forks•00 stars•1919 issues•33 pull requests•Updated Jan 27, 2023Jan 27, 2023

• libgpml-javadoc

  Public
  libGPML Java documentation

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 27, 2022Aug 27, 2022

• PathVisioRPC

  Public
  PathVisioRPC is an XML-RPC implementation of PathVisio that allows users to create and edit biological pathways, visualize data on pathways, perform pathway sta…

  Java

  •55 forks•88 stars•66 issues•11 pull request•Updated Apr 1, 2022Apr 1, 2022

• homology.mapper

  Public
  GPML Homology Mapper

  Java

  •

  Apache License 2.0

  •22 forks•00 stars•11 issue•00 pull requests•Updated Mar 29, 2022Mar 29, 2022

• pathvisio4-maven

  Public
  Java

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 2, 2021Dec 2, 2021

• BH2021

  Public
  biohackeu21

  biohackeu21

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 11, 2021Nov 11, 2021

• GPML

  Public
  Graphical Pathway Markup Language

  Python

  •33 forks•55 stars•1111 issues•00 pull requests•Updated Oct 21, 2021Oct 21, 2021

• OSSRH-73582

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 28, 2021Sep 28, 2021

• WP-plugin

  Public
  Plugin for PathVisio that provides a WikiPathways client.

  Java

  •

  Apache License 2.0

  •55 forks•22 stars•1010 issues•33 pull requests•Updated Mar 31, 2020Mar 31, 2020

• GO-plugin

  Public
  Java

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 1, 2019May 1, 2019

• RPathVisio

  Public
  R package for PathVisioRPC

  R

  •44 forks•22 stars•22 issues•00 pull requests•Updated Apr 1, 2019Apr 1, 2019

• tutorials

  Public
  Tutorials and workshop material for PathVisio

  33 forks•00 stars•00 issues•00 pull requests•Updated Oct 8, 2018Oct 8, 2018

• org.pathvisio.typeconverter

  Public
  Enables the conversion of pathway elements into other types (e.g. Label into Metabolite)

  Java

  •

  Apache License 2.0

  •11 fork•11 star•55 issues•11 pull request•Updated Apr 25, 2018Apr 25, 2018

• FindYourInteraction

  Public
  PathVisio plugin to find relevant metabolic reactions from Rhea

  reactionsmetabolismpathways+ 2

  reactionsmetabolismpathwaysmetabolic-pathwaysrhea

  Java

  •

  Apache License 2.0

  •11 fork•11 star•11 issue•00 pull requests•Updated Apr 25, 2018Apr 25, 2018

• GSEA-plugin

  Public
  GSEA plugin for PathVisio

  pathwaygseapathvisio+ 2

  pathwaygseapathvisiogenesetspvplugin

  Java

  •11 fork•00 stars•11 issue•00 pull requests•Updated Dec 18, 2017Dec 18, 2017

• libGPML-old

  Public
  library to read/write GPML

  Java

  •

  Apache License 2.0

  •44 forks•00 stars•55 issues•00 pull requests•Updated Aug 24, 2017Aug 24, 2017

• PathwayLoom

  Public
  PathwayLoom plugin for PathVisio

  pathwaypathvisiopvplugin

  pathwaypathvisiopvplugin

  Java

  •

  Apache License 2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 14, 2017Feb 14, 2017

• org.pathvisio.tissueanalyzer

  Public
  Tissue Analyser Plugin

  Java

  •11 fork•00 stars•99 issues•00 pull requests•Updated Jul 27, 2016Jul 27, 2016

• mappbuilder

  Public
  MAPPBuilder plugin for PathVisio

  Java

  •

  Apache License 2.0

  •22 forks•00 stars•55 issues•00 pull requests•Updated Mar 8, 2016Mar 8, 2016

• RegInt-Plugin

  Public
  Visualize regulatory interactions in the side panel of PathVisio

  Java

  •

  Apache License 2.0

  •11 fork•11 star•00 issues•00 pull requests•Updated Dec 18, 2015Dec 18, 2015

• biopax-plugin

  Public
  PathVisio plugin to import and export pathways in BioPAX format

  Web Ontology Language

  •

  Apache License 2.0

  •33 forks•11 star•11 issue•00 pull requests•Updated Apr 23, 2015Apr 23, 2015

• MiPaSt

  Public
  miRNA pathway statistics plugin for PathVisio

  Java

  •

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2015Apr 13, 2015

• pv-minimap

  Public
  Plugin for PathVisio that adds a MiniMap side panel for navigation in large pathways

  00 forks•00 stars•00 issues•00 pull requests•Updated Sep 6, 2013Sep 6, 2013