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Merged
nicost merged 4 commits into from
Aug 21, 2025
Merged

Build: transition to maven central deployment. #811

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de8d43b
Build: transition to maven central deployment.
nicost Aug 21, 2025
792349a
Build: add debug output to conftest.py to see why the core is
nicost Aug 21, 2025
05c699d
Fix broken tests due to unchecked changes in mmpycores API.
nicost Aug 21, 2025
cd1d2c7
Build: Error not Exception..
nicost Aug 21, 2025
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13 changes: 6 additions & 7 deletions .github/workflows/build_and_deploy.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -47,7 +47,7 @@ jobs:
if: ${{ needs.check-java-version.outputs.changed == 'true' }}


name: Deploy PycroManagerJava.jar to Sonatype OSS
name: Deploy PycroManagerJava.jar to Maven central
runs-on: ubuntu-latest

steps:
Expand All @@ -65,18 +65,17 @@ jobs:
with: # running setup-java again overwrites the settings.xml
java-version: 8
distribution: 'zulu'

server-id: ossrh
server-username: OSSRH_USERNAME
server-password: OSSRH_PASSWORD
server-id: central
server-username: MAVEN_USERNAME
server-password: MAVEN_PASSWORD
gpg-private-key: ${{ secrets.MAVEN_GPG_PRIVATE_KEY }}
gpg-passphrase: MAVEN_GPG_PASSPHRASE

- name: Publish to Apache Maven Central
run: mvn deploy --file java/pom.xml -Dgpg.passphrase=${{ secrets.MAVEN_GPG_PASSPHRASE }}
env:
OSSRH_USERNAME: ${{ secrets.OSSRH_USERNAME }}
OSSRH_PASSWORD: ${{ secrets.OSSRH_PASSWORD }}
OSSRH_USERNAME: ${{ secrets.MAVEN_USERNAME }}
OSSRH_PASSWORD: ${{ secrets.MAVEN_PASSWORD }}
MAVEN_GPG_PASSPHRASE: ${{ secrets.MAVEN_GPG_PASSPHRASE }}


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36 changes: 17 additions & 19 deletions java/pom.xml
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Expand Up @@ -23,7 +23,7 @@
<developer>
<id>nicost</id>
<name>Nico Stuurman</name>
<organization>UCSF/HHMI</organization>
<organization>UCSF</organization>
</developer>
</developers>

Expand Down Expand Up @@ -55,7 +55,7 @@
<dependency>
<groupId>org.micro-manager.acqengj</groupId>
<artifactId>AcqEngJ</artifactId>
<version>0.39.0</version>
<version>0.39.2</version>
</dependency>
<dependency>
<groupId>org.micro-manager.ndviewer</groupId>
Expand Down Expand Up @@ -111,29 +111,27 @@
<goal>sign</goal>
</goals>

<configuration>
<gpgArguments>
<arg>--pinentry-mode</arg>
<arg>loopback</arg>
</gpgArguments>
<configuration>
<gpgArguments>
<arg>--pinentry-mode</arg>
<arg>loopback</arg>
</gpgArguments>
</configuration>

</execution>
</executions>
</plugin>

<plugin>
<groupId>org.sonatype.plugins</groupId>
<artifactId>nexus-staging-maven-plugin</artifactId>
<version>1.6.13</version>
<extensions>true</extensions>
<configuration>
<serverId>ossrh</serverId>
<nexusUrl>https://s01.oss.sonatype.org/</nexusUrl>
<autoReleaseAfterClose>true</autoReleaseAfterClose>
<stagingProgressTimeoutMinutes>20</stagingProgressTimeoutMinutes>
</configuration>

<groupId>org.sonatype.central</groupId>
<artifactId>central-publishing-maven-plugin</artifactId>
<version>0.8.0</version>
<extensions>true</extensions>
<configuration>
<publishingServerId>central</publishingServerId>
<autoPublish>true</autoPublish>
<waitUntil>published</waitUntil>
</configuration>
</plugin>

</plugins>
Expand All @@ -148,4 +146,4 @@
</repository>
</distributionManagement>

</project>
</project>
10 changes: 7 additions & 3 deletions pycromanager/test/conftest.py
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Expand Up @@ -55,13 +55,17 @@ def install_mm():
if is_port_in_use(4827):
print('Using Micro-manager running on port 4827 for testing')
yield
elif find_existing_mm_install():
try:
path = find_existing_mm_install()
print('Micro-Manager is already installed, skipping installation')
yield find_existing_mm_install()
else:
yield path
except FileNotFoundError:
print("No Micro-Manager installation found, installing now")
# Download an install latest nightly build
mm_install_dir = download_and_install_mm(destination='auto')

print('Micro-Manager installed in ' + mm_install_dir)

#### Replace with newer versions of Java libraries ####
# find pycro-manager/java path
if os.path.isdir('java'):
Expand Down
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