rh-library

A collection of deployment ready machine learning tools developed by CAAI. Each model is packaged in rh-node to enable easy deployment with docker.

CAAI nodes

Tools developed by members of CAAI, packaged in rh-node.

node	dicom	description	dependencies	project
zerodose	link	FDG anomaly detection	hdbet	https://github.com/CAAI/zerodose
hdctbet		CT brain extraction		https://github.com/CAAI/HD-CTBET
amyloidai		Amyloid status estimation	hdbet, hdctbet	https://github.com/CAAI/amyloidAI
aims		MS lesions segmentation	hdbet, flirt, reorient2std	https://github.com/CAAI/AIMS
brainpetnr		PET denoising for PE2I and PiB	hdctbet, flirt, fslmaths, convertXFM	https://github.com/CAAI/brainPETNR
pe2idenoiser		PET denoising for Vision and Quadra PE2I	hdctbet, flirt, fslmaths, convertXFM	https://github.com/CAAI/PE2I_denoiser
public_glio		Glioma segmentation from MRI	hdbet, flirt, reorient2std, convertXFM	https://github.com/DEPICT-RH/public_glio

General purpose nodes

Other tools, packaged in rh-node.

node	description	dependencies	project
hdbet	MRI brain extraction		https://github.com/MIC-DKFZ/HD-BET
synthseg	MRI brain segmentation		https://github.com/BBillot/SynthSeg
reorient2std	(FSL) Reorient to standard orientation		https://fsl.fmrib.ox.ac.uk/fsl
flirt	(FSL) Registration and resampling		https://fsl.fmrib.ox.ac.uk/fsl
convertxfm	(FSL) Modify XFM files		https://fsl.fmrib.ox.ac.uk/fsl
fslmaths	(FSL) Simple maths operations on nii files		https://fsl.fmrib.ox.ac.uk/fsl

Overview of active nodes at Rigshospitalet/CAAI

Research (port 9030)

Node name	Status
titan5	Up
titan6	Up
aims	Up

Production (port 9040)

Node name	Status
caai1	Up
titan7	Up