Linking errors in MALI build on Perlmutter

[xylar]

With both gnu and gnugpu, I'm seeing linking errors on Perlmutter when I try to build with the branch from #944:

ftn -O3 -m64  -fopenmp -o landice_model /global/homes/x/xylar/compass/switch-to-mache-deploy/MALI-Dev/components/mpas-albany-landice/../mpas-framework/src/driver/*.o -L/global/homes/x/xylar/compass/switch-to-mache-deploy/MALI-Dev/components/mpas-albany-landice/../mpas-framework/src -Lsrc -ldycore -lops -lframework -L/pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib -lpiof -lpioc -L/opt/cray/pe/netcdf-hdf5parallel/4.9.2.1/gnu/12.3/lib -lnetcdff -L/opt/cray/pe/netcdf-hdf5parallel/4.9.2.1/gnu/12.3/lib -lnetcdff -lnetcdf -L/opt/cray/pe/parallel-netcdf/1.12.3.19/gnu/12.3/lib -lpnetcdf -lstdc++ -I./external/esmf_time_f90 -L/global/homes/x/xylar/compass/switch-to-mache-deploy/MALI-Dev/components/mpas-albany-landice/../mpas-framework/src/external/esmf_time_f90 -lesmf_time
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: src/libdycore.a(Interface_velocity_solver.o): in function `velocity_solver_set_parameters':
Interface_velocity_solver.cpp:(.text+0x1b51): undefined reference to `velocity_solver_set_physical_parameters__(double const&, double const&, double const&, double const&, double const&, double const&, double const&, bool const&, double const&)'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: src/libdycore.a(Interface_velocity_solver.o): in function `velocity_solver_finalize_':
Interface_velocity_solver.cpp:(.text+0x1bc5): undefined reference to `velocity_solver_finalize__()'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: src/libdycore.a(Interface_velocity_solver.o): in function `velocity_solver_solve_fo_':
Interface_velocity_solver.cpp:(.text+0x55f2): undefined reference to `velocity_solver_solve_fo__(int, int, int, bool, bool, std::vector<int, std::allocator<int> > const&, std::vector<int, std::allocator<int> > const&, double, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> >&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> >&, std::vector<double, std::allocator<double> >&, std::vector<double, std::allocator<double> >&, int&, double const&)'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: src/libdycore.a(Interface_velocity_solver.o): in function `velocity_solver_extrude_3d_grid_':
Interface_velocity_solver.cpp:(.text+0x724a): undefined reference to `velocity_solver_extrude_3d_grid__(int, int, int, int, int, int, std::vector<int, std::allocator<int> > const&, std::vector<int, std::allocator<int> > const&, std::vector<double, std::allocator<double> > const&, std::vector<int, std::allocator<int> > const&, std::vector<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >, std::vector<bool, std::allocator<bool> > const&, std::vector<int, std::allocator<int> > const&, std::vector<int, std::allocator<int> > const&, std::vector<int, std::allocator<int> > const&, std::vector<int, std::allocator<int> > const&, std::vector<int, std::allocator<int> > const&, std::vector<int, std::allocator<int> > const&)'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: src/libdycore.a(Interface_velocity_solver.o): in function `velocity_solver_compute_2d_grid_':
Interface_velocity_solver.cpp:(.text+0xf059): undefined reference to `velocity_solver_compute_2d_grid__(int)'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: src/libdycore.a(Interface_velocity_solver.o): in function `velocity_solver_init_mpi_':
Interface_velocity_solver.cpp:(.text+0x1a93): undefined reference to `velocity_solver_init_mpi__(int)'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: src/libdycore.a(Interface_velocity_solver.o): in function `velocity_solver_export_fo_velocity_':
Interface_velocity_solver.cpp:(.text+0x1bb7): undefined reference to `velocity_solver_export_fo_velocity__(int)'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_inq_file.F90.o): in function `__spio_inq_file_MOD_pio_inquire_fh':
spio_inq_file.F90:(.text+0x487): undefined reference to `PIOc_get_iosystem'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_inq_file.F90.o): in function `__spio_inq_file_MOD_pio_inq_unlimdim_fh':
spio_inq_file.F90:(.text+0x4de): undefined reference to `PIOc_get_iosystem'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_inq_att.F90.o): in function `__spio_inq_att_MOD_pio_inq_att_fh_vid_offlen':
spio_inq_att.F90:(.text+0x31a): undefined reference to `PIOc_get_iosystem'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_inq_att.F90.o): in function `__spio_inq_att_MOD_pio_inq_attlen_fh_varid_attid_offlen':
spio_inq_att.F90:(.text+0x8cf): undefined reference to `PIOc_get_iosystem'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_inq_att.F90.o): in function `__spio_inq_att_MOD_pio_inq_atttype_fh_vid':
spio_inq_att.F90:(.text+0xf1c): undefined reference to `PIOc_get_iosystem'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_inq_att.F90.o):spio_inq_att.F90:(.text+0x15c4): more undefined references to `PIOc_get_iosystem' follow
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_err.F90.o): in function `__spio_err_MOD_pio_file_warn':
spio_err.F90:(.text+0x58a): undefined reference to `PIOc_warn'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_err.F90.o): in function `__spio_err_MOD_pio_iosys_warn':
spio_err.F90:(.text+0x6aa): undefined reference to `PIOc_warn'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_err.F90.o): in function `__spio_err_MOD_pio_file_error':
spio_err.F90:(.text+0xa17): undefined reference to `PIOc_error'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_err.F90.o): in function `__spio_err_MOD_pio_iosys_error':
spio_err.F90:(.text+0xb07): undefined reference to `PIOc_error'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_init.F90.o): in function `__spio_init_MOD_pio_init_intercomm':
spio_init.F90:(.text+0x7dc): undefined reference to `PIOc_Init_Intercomm_from_F90'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_get_att.F90.o): in function `__spio_get_att_MOD_pio_get_att_fh_vid_1d_double':
spio_get_att.F90:(.text+0xd02): undefined reference to `PIOc_get_iosystem'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_get_att.F90.o): in function `__spio_get_att_MOD_pio_get_att_fh_vid_0d_double':
spio_get_att.F90:(.text+0xe41): undefined reference to `PIOc_get_iosystem'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_get_att.F90.o): in function `__spio_get_att_MOD_pio_get_att_fh_vid_1d_real':
spio_get_att.F90:(.text+0xf42): undefined reference to `PIOc_get_iosystem'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_get_att.F90.o): in function `__spio_get_att_MOD_pio_get_att_fh_vid_0d_real':
spio_get_att.F90:(.text+0x1081): undefined reference to `PIOc_get_iosystem'
/usr/lib64/gcc/x86_64-suse-linux/14/../../../../x86_64-suse-linux/bin/ld: /pscratch/sd/x/xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_gnu_mpich/.spack-env/view/lib/libpiof.a(spio_get_att.F90.o): in function `__spio_get_att_MOD_pio_get_att_fh_vid_1d_int':

[xylar]

Similar errors on Chrysalis with Gnu:

mpif90 -O3 -m64 -fopenmp -o landice_model /home/ac.xylar/compass/switch-to-mache-deploy/MALI-Dev/components/mpas-albany-landice/../mpas-framework/src/driver/*.o -L/home/ac.xylar/compass/switch-to-mache-deploy/MALI-Dev/components/mpas-albany-landice/../mpas-framework/src -Lsrc -ldycore -lops -lframework -L/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib -lpiof -lpioc -L/gpfs/fs1/soft/chrysalis/spack/opt/spack/linux-centos8-x86_64/gcc-11.2.0/netcdf-c-4.7.4-pfocec2/lib -L/gpfs/fs1/soft/chrysalis/spack/opt/spack/linux-centos8-x86_64/gcc-11.2.0/netcdf-fortran-4.5.3-va3hoor/lib -lnetcdff -lnetcdf -L/gpfs/fs1/soft/chrysalis/spack/opt/spack/linux-centos8-x86_64/gcc-11.2.0/parallel-netcdf-1.11.0-d7h4ysd/lib -lpnetcdf  -L/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/opt/spack/linux-rhel8-zen2/gcc-11.2.0/albany-compass-2026-03-21-uijtjubjejsjqg6jnx63akfgoi3pzrph/lib64 -L/gpfs/fs1/soft/chrysalis/spack/opt/spack/linux-centos8-x86_64/gcc-9.3.0/gcc-11.2.0-bgddrif/lib64 -L/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/opt/spack/linux-rhel8-zen2/gcc-11.2.0/trilinos-for-albany-compass-2026-02-06-4ceztp6dzztabdavypfhnnnu4bbmhfym/lib64 -L/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/opt/spack/linux-rhel8-zen2/gcc-11.2.0/openblas-0.3.28-qkknclyeohopouh5rltil5lu7voxywzk/lib -L/usr/lib64 -L/gpfs/fs1/soft/chrysalis/spack/opt/spack/linux-centos8-x86_64/gcc-11.2.0/netcdf-c-4.7.4-pfocec2/lib -L/gpfs/fs1/soft/chrysalis/spack/opt/spack/linux-centos8-x86_64/gcc-11.2.0/hdf5-1.10.7-ol6xuae/lib -L/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/opt/spack/linux-rhel8-zen2/gcc-11.2.0/zlib-ng-2.2.1-nabkgesob4wvvlrvx43z2ucpzw3vlatr/lib -L/gpfs/fs1/soft/chrysalis/spack/opt/spack/linux-centos8-x86_64/gcc-11.2.0/parallel-netcdf-1.11.0-d7h4ysd/lib -L/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/opt/spack/linux-rhel8-zen2/gcc-11.2.0/parmetis-4.0.3-kc6zncyboivt7o4q7dgo3hx7oqc3h4tc/lib -L/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/opt/spack/linux-rhel8-zen2/gcc-11.2.0/metis-5.1.0-juosyuvco4it3c7dcrmvjflaqnhuzwbw/lib -Wl,-rpath,/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/opt/spack/linux-rhel8-zen2/gcc-11.2.0/albany-compass-2026-03-21-uijtjubjejsjqg6jnx63akfgoi3pzrph/lib64 -lcorePDEs -lmpasInterface -lgfortran -llandIce -lalbanyLib -lpanzer-expr-eval -lpanzer-dof-mgr -lpanzer-core -lpiro -ltempus -lmuelu-adapters -lmuelu -llocatpetra -llocathyra -llocalapack -lloca -lnoxlapack -lnox -lphalanx -lstk_balance_lib -lsearch_tolerance_algs -lstk_pmesh_lib -lstk_tools_lib -lstk_transfer_util -lopenblas -lstk_search_util -lstk_io_util -lstk_io -lstk_mesh_base -lstk_transfer_lib -lstk_search -lstk_topology -lstk_expreval -lstk_math -lstk_coupling -lstk_util_command_line -lstk_util_diag -lstk_util_registry -lstk_util_env -lstk_util_parallel -lstk_util_util -lintrepid2 -lteko -lstratimikos -lstratimikosbelos -lstratimikosamesos2 -lifpack2-adapters -lifpack2 -lTpetraModeLaplace -lanasazitpetra -lanasazi -lmapvarlib -lsuplib_cpp -lsuplib_c -lsuplib -lsupes -laprepro_lib -lchaco -lio_info_lib -lIonit -lIotr -lIohb -lIogs -lIotm -lIogn -lIovs -lIonull -lIoex -lIoss -ldl -lnemesis -lexoIIv2for32 -lexodus_for -lexodus -lnetcdf -lhdf5 -lhdf5_hl -lhdf5_hl -lhdf5 -lz -lpnetcdf -lamesos2 -lbelosxpetra -lbelostpetra -lbelos -lzoltan2 -lgaleri-xpetra -lxpetra -lthyratpetra -lthyracore -ltrilinosss -ltpetraext -ltpetrainout -ltpetra -ltpetraclassic -lkokkostsqr -lshards -lzoltan -lparmetis -lmetis -lm -lminitensor -lsacado -lrtop -lteuchoskokkoscomm -lteuchoskokkoscompat -lteuchosremainder -lteuchosnumerics -lteuchoscomm -lteuchosparameterlist -lteuchosparser -lteuchoscore -lkokkoskernels -lkokkoscontainers -lkokkosalgorithms -lkokkossimd -lkokkoscore -ldl -lopenblas -lopenblas -lmetis -lgfortran -lstdc++ -lmpi_cxx -lstdc++ -I./external/esmf_time_f90 -L/home/ac.xylar/compass/switch-to-mache-deploy/MALI-Dev/components/mpas-albany-landice/../mpas-framework/src/external/esmf_time_f90 -lesmf_time
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_inq_file.F90.o): In function `__spio_inq_file_MOD_pio_inquire_fh':
spio_inq_file.F90:(.text+0x4c7): undefined reference to `PIOc_get_iosystem'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_inq_file.F90.o): In function `__spio_inq_file_MOD_pio_inq_unlimdim_fh':
spio_inq_file.F90:(.text+0x51e): undefined reference to `PIOc_get_iosystem'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_inq_att.F90.o): In function `__spio_inq_att_MOD_pio_inq_att_fh_vid_offlen':
spio_inq_att.F90:(.text+0x35a): undefined reference to `PIOc_get_iosystem'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_inq_att.F90.o): In function `__spio_inq_att_MOD_pio_inq_attlen_fh_varid_attid_offlen':
spio_inq_att.F90:(.text+0x99f): undefined reference to `PIOc_get_iosystem'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_inq_att.F90.o): In function `__spio_inq_att_MOD_pio_inq_atttype_fh_vid':
spio_inq_att.F90:(.text+0x10aa): undefined reference to `PIOc_get_iosystem'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_inq_att.F90.o):spio_inq_att.F90:(.text+0x177d): more undefined references to `PIOc_get_iosystem' follow
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_err.F90.o): In function `__spio_err_MOD_pio_file_warn':
spio_err.F90:(.text+0x358): undefined reference to `PIOc_warn'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_err.F90.o): In function `__spio_err_MOD_pio_iosys_warn':
spio_err.F90:(.text+0x478): undefined reference to `PIOc_warn'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_err.F90.o): In function `__spio_err_MOD_pio_file_error':
spio_err.F90:(.text+0x81b): undefined reference to `PIOc_error'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_err.F90.o): In function `__spio_err_MOD_pio_iosys_error':
spio_err.F90:(.text+0x91b): undefined reference to `PIOc_error'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_init.F90.o): In function `__spio_init_MOD_pio_init_intercomm':
spio_init.F90:(.text+0x7fa): undefined reference to `PIOc_Init_Intercomm_from_F90'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_get_att.F90.o): In function `__spio_get_att_MOD_pio_get_att_fh_vid_1d_double':
spio_get_att.F90:(.text+0xd68): undefined reference to `PIOc_get_iosystem'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_get_att.F90.o): In function `__spio_get_att_MOD_pio_get_att_fh_vid_0d_double':
spio_get_att.F90:(.text+0xeb1): undefined reference to `PIOc_get_iosystem'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_get_att.F90.o): In function `__spio_get_att_MOD_pio_get_att_fh_vid_1d_real':
spio_get_att.F90:(.text+0xfb8): undefined reference to `PIOc_get_iosystem'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_get_att.F90.o): In function `__spio_get_att_MOD_pio_get_att_fh_vid_0d_real':
spio_get_att.F90:(.text+0x1101): undefined reference to `PIOc_get_iosystem'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_get_att.F90.o): In function `__spio_get_att_MOD_pio_get_att_fh_vid_1d_int':
spio_get_att.F90:(.text+0x1208): undefined reference to `PIOc_get_iosystem'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpiof.a(spio_get_att.F90.o):spio_get_att.F90:(.text+0x1351): more undefined references to `PIOc_get_iosystem' follow
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpioc.a(pio_nc4.c.o): In function `PIOc_inq_var_filter_ids':
pio_nc4.c:(.text+0x2d40): undefined reference to `nc_inq_var_filter_ids'
/lcrc/group/e3sm/ac.xylar/spack_test/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_openmpi/.spack-env/view/lib/libpioc.a(pio_nc4.c.o): In function `PIOc_inq_filter_avail':
pio_nc4.c:(.text+0x33da): undefined reference to `nc_inq_filter_avail'
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:1057: mpas] Error 1
make[1]: Leaving directory '/gpfs/fs1/home/ac.xylar/compass/switch-to-mache-deploy/MALI-Dev/components/mpas-albany-landice'
make: *** [Makefile:288: gfortran] Error 2

[matthewhoffman]

@mperego , do these errors make sense or not related to your expectation for backward compatibility with the new version of Albany? (The behavior above is using develop rather than the debris-friction branch.)

[mperego]

@matthewhoffman no, I think the linking issue is not related to the interface changes in the new version of Albany. It seems that Albany libraries are not linked.

[mperego]

On Chrysalis, Albany seems to be linked fine -lcorePDEs -lmpasInterface -lgfortran -llandIce -lalbanyLib , in fact the link errors are only related to PIO.

[xylar]

Probably worth checking if this is happening as it should:
https://github.com/xylar/compass/blob/7f0a4b13b2b4cbd13aaaf6dca293e68766ad7510/deploy/load.sh#L31-L50

[mperego]

We commented at the same time. I think on Chrysalis the Albany libs are imported correctly

[xylar]

in fact the link errors are only related to PIO.

Yes, and yet -lpiof and and -lpioc are there, as is the path to the spack view. So had to understand why unless MALI is expecting an older (or otherwise incompatible) SCORPIO than I am building.

[matthewhoffman]

@xylar , I've determined that the spack view is mixing PIO libs from two packages: piof is coming from scorpio and pioc is coming from esmf.

$ readlink /global/cfs/cdirs/e3sm/software/compass/pm-cpu/spack/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_mpich/.spack-env/view/lib/libpioc.a

/global/cfs/cdirs/e3sm/software/compass/pm-cpu/spack/dev_compass_2.0.0/opt/spack/linux-sles15-zen3/gcc-14/esmf-8.9.1-vtldg266g5hdraqndqnqg3fo2ke6xty2/lib/libpioc.a


$ readlink /global/cfs/cdirs/e3sm/software/compass/pm-cpu/spack/dev_compass_2.0.0/var/spack/environments/compass_albany_gnu_mpich/.spack-env/view/lib/libpiof.a

/global/cfs/cdirs/e3sm/software/compass/pm-cpu/spack/dev_compass_2.0.0/opt/spack/linux-sles15-zen3/gcc-14/e3sm-scorpio-1.8.2-chdrl2l3kampbp63lf6cxx7lypur7kcf/lib/libpiof.a

I don't have experience with the spack deployment, but I'm happy to dig into it if the next steps aren't immediately obvious to you.

[xylar]

Okay, thanks! I think that helps a lot!

[xylar]

I'll debug further over the weekend.