diff --git a/source/recipe.rst b/source/recipe.rst index df29b4e..3bcc8e7 100644 --- a/source/recipe.rst +++ b/source/recipe.rst @@ -267,7 +267,8 @@ To assign synapse properties, the classification field needs to be set: .. note:: The type has to start with either ``E`` for excitatory connections or - ``I`` for inhibitory connections. + ``I`` for inhibitory connections. This legacy behavior may be overriden by + specifying the `connection_model` parameter for the `SynapsesClassification` section. Two optional attributes may be set: @@ -318,7 +319,7 @@ property name: Truncated Normal distributions are limited to the central value ±σ and are re-rolled until positive values has been obtained. -Two optional attributes can be specified, where each attribute will have to +Three optional attributes can be specified, where each attribute will have to be given for all `SynapsesClassification` elements: - `gsynSRSF`, the scale factor for the conductance; `SRSF`: 'synaptic receptor scaling factor' @@ -332,6 +333,9 @@ be given for all `SynapsesClassification` elements: where :math:`ca` denotes the simulated calcium concentration in millimolar and :math:`y` a scalar such that at :math:`ca = 2.0:\ u_\text{final} = u`. (Markram et al., 2015) +- `connection_model`, to specify the filename stub (without a final extension) that should + appear in the field with the same name in the corresponding SONATA edge file. Presence + of this attribute will suppress creating the `syn_type_id` field in the edge file. These attributes will be copied for each synapse corresponding to its classification. If they are not specified, no corresponding columns will diff --git a/source/sonata_tech.rst b/source/sonata_tech.rst index 8d09f6f..5333507 100644 --- a/source/sonata_tech.rst +++ b/source/sonata_tech.rst @@ -288,10 +288,11 @@ Group column represents the HDF group where the dataset is located under /